I have now added the new version of the "Towards atomistic resolution structure of phosphatidylcholine glycerol backbone and choline headgroup at different ambient conditions" manuscript in the GitHub:
The filenames for this version are HGmodel_ACStemplate.tex and
HGmodel_ACStemplate.pdf. The latter can be found also from the Dropbox link.
The manuscript has been now put in the ACS template and the current idea is to submit it first to the Journal of American Chemical Society (JACS), for the reasons discussed in the Towards first submission to journal post. I have now modified the abstract and conclusions to be more suitable for this journal. The journal for the first submission can be still discussed if there are objections from the authors.
Otherwise, I hope that the current version will become the final version for the first submission once the issues written with red in the manuscript are fixed.
If you want to proofread, or otherwise comment the manuscript, the most convenient way is that you modify directly the HGmodel_ACStemplate.tex file and make a pull request to update the changes also to the GitHub. More traditional options for commenting/modifying can be used, however the changes should be made somehow visible.
We have also started to use the issue tracker in GitHub and it seems to be quite convenient, at least from my point of view:
There are issues related to this version as well, and do not be shy to add more. I think that especially more detailed and technical issues are convenient to deal with the issue tracker.
I am now also writing the draft of the cover letter, and I will add this to the GitHub also in the near future.